GgaINT0126700 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV60]
Coordinates
chr17:927031-927504:+
Coord C1 exon
chr17:927031-927203
Coord A exon
chr17:927204-927386
Coord C2 exon
chr17:927387-927504
Length
183 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
CCGTCGGCCTCTCTCCGCAGTAC
3' ss Score
9.68
Exon sequences
Seq C1 exon
CCCCGCGGGTTCCGCCCGAGGCGCCGTGCCGTGCCGGCCCTGCGGAGCGCTCCGACATGCGGCCCGTGCGCCCGGCGGCCGCGCTGCCGGTGCTGGCCGGGCTGGCCGTGCTGGTGACCGCCGCCCTCCTCCTGGTGCTGACCGCGTCCCGGGACCGTCCCGTCAGGAAGAAA
Seq A exon
GTAGGTGCCCGGGGCCGGGACGGGCGCCCCCCCGCCCTTCCCTCTGCCCGGCCGGCGGCGCTGCGCGCAGCCCGCACTCCGCGGTGAGGTGGTGGGGCAGAGCCCGCTCGGGCTCGGGAGGCGCTGAGGGACGGCCGAGCTCCGCGCCCCGGCACCCCGCCAGCCGTCGGCCTCTCTCCGCAG
Seq C2 exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTACGTCTACCAGTGGTCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAGGTGGAGTCCTGCACTGTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008936:ENSGALT00000014522:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.6=17.9)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCTGGTGCTGACC
R:
ATTCACAGTGCAGGACTCCAC
Band lengths:
166-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]