RnoINT0055223 @ rn6
Intron Retention
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2290293-2290640:+
Coord C1 exon
chr3:2290293-2290434
Coord A exon
chr3:2290435-2290522
Coord C2 exon
chr3:2290523-2290640
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
TCTGCCCGTGTTGTCCCTAGTTT
3' ss Score
10.23
Exon sequences
Seq C1 exon
CTCAGCCCCTCCCACCATGAGACTTTCCTGGAAGGAACGGGTCTTCATGGTCCTGTTGGGAGTTGCAGCAGCTTCTGGCCTCACCATGCTCATCCTCATCCTGGTGAAAGCAACCAATGTTCTCCTGCCTGCAGACACCAAG
Seq A exon
GTTTGGCTCAGGGACCTAACGAGGATGTTGCACTGGGTGACCAGAATGTATGTTGGTCTCAATATCTTTCTGCCCGTGTTGTCCCTAG
Seq C2 exon
TTTGGGATCCTGTTTGACGCCGGCTCCTCCCACACATCACTGTTTGTGTACCAGTGGCCAGCAAACAAGGAGAAGGACACAGGAGTGGTCAGCCAGGCCCTGGCTTGCCAGGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239:ENSRNOT00000012289:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=19.0)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCTTCATGGTCCTGTTG
R:
CTTGTTTGCTGGCCACTGGTA
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]