MmuALTD0013862-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036160 | Surf6
Description
surfeit gene 6 [Source:MGI Symbol;Acc:MGI:98447]
Coordinates
chr2:26744148-26747693:-
Coord C1 exon
chr2:26747511-26747693
Coord A exon
chr2:26747495-26747510
Coord C2 exon
chr2:26744148-26744898
Length
16 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TGCTTTTGTTTACTCTGCAGTGG
3' ss Score
7.03
Exon sequences
Seq C1 exon
GTGGTGCTAGTGCAGGTCTAGGCAACAGACTGGGTCTCCTGTGTGAGGTCAACACAGTTCTTGCACCCCACAACCATAGTGAGATCTCTGACTGTGTGCCTGGTTGTTTCATCAGCATCTTTAAGAAGGACCGTGTCCTCCAGGCCCTGAGAGGGATAGAGGGGATCTCCCATGTTTGGAGAG
Seq A exon
GTGTGTCTACGTGTCT
Seq C2 exon
TGGACTGACTGCCACAGTGTGCTGTGTGCCTTGAGTCACTTCAGTGGAGACTGCAATATGGAGAACCCAGAGGAGGCCTGAGTGAGATCCCAATGACATCTTCTGTGATTCTGCCTGGTTACTGGATTTTCTTCATCTTGTTACCACAAGAGGCATAAACTCCTCTTCCTTGTATAAGACTGTTTTTCTATCAAAGGTAGTTAACAAAGGCCCATATTGACTTAACTGCCCCAAGCCCCTTCTCACCACTTAGACTTGTGAGATTATGAAGTCATTCCTTCACCAATGGGAAGAGACACAGTCACCTGTACTCAGGATAAGAGACAAAGGCTGTCTTAGTTATTGCTGTGGCAAAACAGTATGTTCAAGGCAATTTACAGAGGAATGTCAGAAAGTTCATGACCATTATGTATACCATAGCAGCAGGCAGGCAGGCAGGCATGGTGCTGGGGCAGTATTGAGAACTCACATTTGACCTACAAGAAGGTGGCAGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036160-8-9,9-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGTGTGCCTGGTTGTT
R:
CACACTGTGGCAGTCAGTCC
Band lengths:
117-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: