MmuEX0027178 @ mm9
Exon Skipping
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32812769-32815133:-
Coord C1 exon
chr2:32815037-32815133
Coord A exon
chr2:32813678-32813734
Coord C2 exon
chr2:32812769-32812813
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAACATCTTTTTCTCCCCAGGCA
3' ss Score
9.39
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTCCAGAAGAGCTCACACCGGAGGATGCCCCTCTTCTTTCGGAAGCGGAAACCCAGTGAGGAGGCTCGAAAACGCCTGGAGTACCAGATGTGTCTG
Seq A exon
GCAAAAGAAGCTGGGGCAGATGACATTCTCGACATCTCTAAATGTGAGCTCTCTGAG
Seq C2 exon
ATTCCATTTGGGGCTTTTGCAACGTGCAAAGTTCTACAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792_MULTIEX2-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138551=LRR_8=PU(42.3=57.9)
C2:
PF138551=LRR_8=PD(50.0=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGAGCTCACACCGGAG
R:
TCTGTAGAACTTTGCACGTTGC
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types