HsaEX7005609 @ hg38
Exon Skipping
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr9:127454496-127455620:+
Coord C1 exon
chr9:127454496-127454599
Coord A exon
chr9:127454998-127455054
Coord C2 exon
chr9:127455576-127455620
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAAATTCTTTTTATCCTTAGGCA
3' ss Score
7.98
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTCCTAAAGATCGCTCTGGGAAAAGGGAAGGATGCCGCTCTTCTTCCGGAAGCGGAAACCCAGTGAGGAGGCTCGGAAACGCCTGGAGTACCAGATGTGTTTG
Seq A exon
GCAAAAGAAGCTGGGGCAGATGACATTCTCGACATCTCTAAATGTGAGCTCTCAGAG
Seq C2 exon
ATTCCATTTGGAGCTTTTGCAACATGCAAAGTTCTGCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356-'4-6,'4-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138551=LRR_8=PU(21.2=57.9)
C2:
PF138551=LRR_8=FE(26.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCGCTCTGGGAAAAGGG
R:
GCATGTTGCAAAAGCTCCAAA
Band lengths:
124-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains