RnoEX6016496 @ rn6
Exon Skipping
Gene
ENSRNOG00000022312 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:RGD Symbol;Acc:1564403]
Coordinates
chr3:12005366-12007570:-
Coord C1 exon
chr3:12007499-12007570
Coord A exon
chr3:12006302-12006358
Coord C2 exon
chr3:12005366-12005415
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAACATCTTTTTCTCCTCAGGCA
3' ss Score
8.61
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
ATGCCTCTCTTCTTTCGGAAGCGGAAACCCAGTGAGGAAGCTCGGAAACGCCTGGAGTACCAGATGTGTCTG
Seq A exon
GCAAAAGAAGCTGGGGCAGATGACATCCTTGACATCTCTAAGTGCGAGCTTTCCGAG
Seq C2 exon
ATTCCATTTGGGGCTTTTGCAACGTGCAAAGTTCTACAGAAAAAGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022312-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTCGGAAGCGGAAACCC
R:
CCTTTTTCTGTAGAACTTTGCACGT
Band lengths:
109-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]