MmuEX0027178 @ mm10
Exon Skipping
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32955181-32959613:-
Coord C1 exon
chr2:32959517-32959613
Coord A exon
chr2:32958158-32958214
Coord C2 exon
chr2:32955181-32955249
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAACATCTTTTTCTCCCCAGGCA
3' ss Score
9.39
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTCCAGAAGAGCTCACACCGGAGGATGCCCCTCTTCTTTCGGAAGCGGAAACCCAGTGAGGAGGCTCGAAAACGCCTGGAGTACCAGATGTGTCTG
Seq A exon
GCAAAAGAAGCTGGGGCAGATGACATTCTCGACATCTCTAAATGTGAGCTCTCTGAG
Seq C2 exon
GTTCTGGATCTCCATGAGAACCAGCTGACAGCCCTTCCTGATGACATGGGGCAGCTGACAGTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792_MULTIEX1-1/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127992=LRR_4=FE(48.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGAGCTCACACCGGAG
R:
TGTCATCAGGAAGGGCTGTCA
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types