DreEX6011782 @ danRer10
Exon Skipping
Gene
ENSDARG00000060683 | lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32281631-32282123:-
Coord C1 exon
chr5:32281941-32282123
Coord A exon
chr5:32281756-32281812
Coord C2 exon
chr5:32281631-32281675
Length
57 bp
Sequences
Splice sites
3' ss Seq
CATGCCTATGTTTTGTGCAGGCC
3' ss Score
8.57
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
TTCAGGGCGTTCTTGGAGATTGTCAACATCACATTCAGTCAGGTTTCACACTGAACCGTCCAGTGGATGTTGTGGGGTTTTAACTAGACAAATAAAATCTCGCTAAGCCTCACGATGTTTTTGTTCAAAAAGAAAAAACCCAGTGGCGATTCCAGGAAACGTCTCGAGTACCAGCTGTGTTTG
Seq A exon
GCCAAAGAAGCAGGTGCTGATGACATTCTGGACATTTCTGCCTGTGAGCTTTCAGAG
Seq C2 exon
GTTCCCTCCTGTGCCTTCTCTATGTGTAAAGTGCTTCAGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGGATGTTGTGGGGTTT
R:
AGAGAAGGCACAGGAGGGAAC
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]