BtaEX6046242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98198263-98199464:+
Coord C1 exon
chr11:98198263-98198366
Coord A exon
chr11:98198877-98198933
Coord C2 exon
chr11:98199420-98199464
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTAATTCTTTTTATCCCTAGGCA
3' ss Score
10.35
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGTGGTGAAGATCGCTCTAGAAAAAAGGAAGGATGCCACTCTTCTTCCGGAAGCGGAAACCCAGCGATGAGGCTCGGAAACGCCTGGAGTACCAGATGTGTCTG
Seq A exon
GCAAAAGAAGCTGGAGCAGATGACATTCTTGACATCTCTAAATGTGAACTCTCCGAG
Seq C2 exon
ATTCCATTTGGGGCTTTTGCAACATGTAAAGTTCTGCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGAAGATCGCTCTAGA
R:
TACATGTTGCAAAAGCCCCAA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]