GgaEX1034262 @ galGal4
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr17:1550138-1553758:-
Coord C1 exon
chr17:1553584-1553758
Coord A exon
chr17:1551808-1551864
Coord C2 exon
chr17:1550138-1550182
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTGTATCTTCTCTTACCAGGCA
3' ss Score
9.74
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AGGACAGCTCTGTAGTCCAGGTTCCACGTGCTCCAAGAGCCATCTGCCTTTATTTGTGCTGGTAGTTTGTGCCATTCAGACGGAGCTGTAGTCACAACTCAAGATGCCCCTTTTCTTCCGTAAGAAGAAACCCAGTGAAGATGCTCGGAAGCGCCTTGAATACCAAATGTGCCTG
Seq A exon
GCAAAAGAGGCTGGTGCCGATGATGTTCTTGACATATCCAAATGTGAACTGTTAGAG
Seq C2 exon
GTTCCATACGGGGCCTTTGCAACTTGTAAGGTCTTGCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'2-8,'2-5,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCTGGTAGTTTGTGCCA
R:
AAGTTGCAAAGGCCCCGTATG
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]