MmuINT0065767 @ mm9
Intron Retention
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32548113-32549695:-
Coord C1 exon
chr2:32549509-32549695
Coord A exon
chr2:32548242-32549508
Coord C2 exon
chr2:32548113-32548241
Length
1267 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
3' ss Seq
ACTGGGACTATGGTTGCTAGGAT
3' ss Score
1.83
Exon sequences
Seq C1 exon
GAAGCGGGGCGGCTCCGGCCCAGGCCTAGCTTGCGGTGGCATTAAGACTATGTCGTGGGCGCGGAGCCGACTGTGCTCGACTCTGTCCCTGGCAGCTGTTTCTGCGCGTGGTGCAACGACGGAGGGCGCGGCGCGGCGGGGGATGAGCGCGTGGCCAGCGCCACAGGAGCCGGGCATGGAGTATCAG
Seq A exon
GTTTCTGACCGTTCCCGCGGGCAAACGGTCCCGTACTGACACGTGGGCAGCACCGGAGCCTTGCTCCGCTCTCCGCCAGCTGCTGGGGGCACCGGAGCATGAAGTTGCGGGGCTCGAGAGGCGGGGACATCCCAGAGCCCAGGGGAGGTGACAGAGACCGGAAAGTTGAGCTCAGGTGGCCCGATGTGGGAATTCTGAGAGCGCGTGTCCGGTGTTGCAGAGGGAATGGGCGCAGGTGACACACCAGAACGTCCAGAATCTGAATTGAGTTTTAGAAGTTCCAATGCAGGGCAATGCAGGATGAAGGGAAGGGAGGAGTTCTGGAGTACAGAGTGGAAGTACCCAGGAGGATCTGGGATTGGGGTCTCCAAGACTCGAAGACTGGAATCTAAGTATTCAGAATTGACCGGCGGGCAGGCAGAAAAAGAGGCAATAAAGAGACCAAGAATCTAGAACAAACTGTAGATTACAAACTGTGCCAGGGTCAGTTGTCAATGACCAGAACTTAATGCTGGCCAGGCAGGTGGCACCGGTTTAGGGCTGTGAGGCTTCCAGCCAAGCCTTGAGGATAAGAGGGCAGGCGACCCAGCTGGTGCCCGAAAGGAACTGCCTAAGCACAGGTTTCTCAGAATGTAGGGTAATTGAAACACACGACTGGATTTATATCCTCAAATGCCTCTCATTTAGGCCTCTCTGTTTATTTTCTGTTTCCACTCCCATCCCCCAAAGCCGTCTCCTGAGGCTGTCTGTACCCACCTGTGGATTCTGGCCCGACAACTCTTGAGTGTACTTTCCCTCCCTCTGTACCTCCTCTTCCAGATCTAATTGCTTACTTACATTGTCTTGTCTTAGGGTTAGAAGGTGGAACTCTCAAATATTCCAAAATTCAAAGTTCCTAGATTTCTAACGTCCTGGCCCCCACTCAGTGGGTGTCCAGTATAGTGGTAGAGAGATTAAGGAAAAAACCTTCCTTCCAGGGTTGGTCTTGTGTGTGAAGGCTGAGGGCATAGAAGCTTGGGGAAGGCAGCCCAGGAAATGAAGGTCCGTTAATCTTGCCAGCTTTACCTGGCACTCCCTGGGTGGGGCTAGCTTGCCCATGGCTCCCATCTTTGCTAGAACTGGAGATATGCCAGGGCTGTCCCACCAAATAGCTGTCGGCAAAGGCAGCGTGGCTGGTATAACGGGCCTGTTGCCCTGGTTTTGCCACTGGTGGGCTGGGTCTCTCTGTCCTTAAGGACCCTCACTGAACTGGGACTATGGTTGCTAG
Seq C2 exon
GATGCTGTGCGCACGCTCAACACCCTGCAAACCAATGCCAGCTACCTGGAGCAGGTAAAGCGCCAACGGAGTGACCCCCAGGCGCAGCTGGAGGCTATGGAGATGTACCTGGCACGGAGTGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-Fpgs:NM_010236:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTAGCTTGCGGTG
R:
CTGCAGTCCACTCCGTGC
Band lengths:
296-1563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: