HsaINT0065775 @ hg19
Intron Retention
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:3824]
Coordinates
chr9:130565154-130566692:+
Coord C1 exon
chr9:130565154-130565341
Coord A exon
chr9:130565342-130566563
Coord C2 exon
chr9:130566564-130566692
Length
1222 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CTGGGCACTGTGGTTGCCAGGAT
3' ss Score
3.85
Exon sequences
Seq C1 exon
GCGGGGCGTCTCCCGCCCGGGCCTAGAGCGCTGCCGGGGGCGCCGGGACTATGTCGCGGGCGCGGAGCCACCTGCGCGCCGCTCTATTCCTGGCAGCGGCGTCTGCGCGCGGCATAACGACCCAGGTCGCGGCGCGGCGGGGCTTGAGCGCGTGGCCGGTGCCGCAGGAGCCGAGCATGGAGTACCAG
Seq A exon
GTATCAGGCGGGCCAGCGGGCCAGCGGGCCTGGGCGCGACGACACGTGGGCCTGCGCTGAGCCGCAGAACATCCGGGCTCCGCTAGCCGAGAGGGTATCGGGAGCCCTGGACTGGGGGACTCGGGGGGCGGAACATCCTGGAGGCTGGGGGTGGGGACAGGGACCAGGAAGTTGGGCCCGGGCCGCCGGGGCTGGGAATTCGGAGACTATAGCGTCCCCGCCCCGGGTTGGGAAGTGGGAAGTGGCACAGGAGCTAGGATCCAGAAGCCCAGAGGCTCAGCGGTGCTTCTGGAGTTCCAGTGATCCCGGAGTCTGAACCGGCAGTGAGAGTGGGGAAAGAGGGTAGGGAAGAGACTCAGGAATTCAGGCTTGAAAGATCCAGGAGTATTGATCTGGGGGTGGGCTGTCCAGGATTCAGAAGATTGGGGATCCAAGTGCCTGGATTTGGGGGAGAGGCAGGAATCAGGGGTAGTGGAGGGCCCCAGAACCTGGAAAATAGAAAATGTCCGCGGGCGCTGTGTCAAGAGCCGGTTGCCCTAGACCAGACCCTGATGCCAGTGAGGCGGGTGGCACTGGTTTGATGAGGGTGGAGCCTCCAACCAGCCTTGAGGTCCTGAGGGTGGGAGGCACGGAATATGAGGCCTAAGGGGAATGAAATAGCACCCCCACTCCCACTTCCATTGTGAACCCTCCTGAAGCCGTACCTACCTGCCTTCCTGGCTGAGTGACCCCTGGCACACCCCTCCTCCCTCTGAGTTGCTCCTCTGTGGGTTGGAATGTGGAACCCCAGAGTCATGAGGGTTGGGGTGGAGCTTCGGGGAACTCCAGAATTCGAATACCCCAGCCTTCTGTAGTTCTGGCCCCGCTCTGGCAGGGAGCAATATAGCAATGGACCCCATTGGAGAGAATGAGGGCAAAGGCCCAGGAGTGAAGTCGGGGGAGCCTGGGCAGGAAGCAAGGCTAGCCCGTTAGTCATGCCACCTTCTTTGTGTAGCACTCCCTGGGTGGGGCTGAACTGCCCCAGACTCCCATTTTTGCCAGAGCTGGAAAGATGCCATACTCTCTGTTGCTTAACCTACAGGCTAGGCTAACAGTGCTGGCATGGCAGGCGGGCCTGGTACTGGCCTTGTTGCCCTGGCTTGGCCACTGGTCTGCTGGCTGTCTCTGTGCCTGTGGACCCTGAGTGAGCCTTAACCTACTATCTGGGCACTGTGGTTGCCAG
Seq C2 exon
GATGCCGTGCGCATGCTCAATACCCTGCAGACCAATGCCGGCTACCTGGAGCAGGTGAAGCGCCAGCGGGGTGACCCTCAGACACAGTTGGAAGCCATGGAACTGTACCTGGCACGGAGTGGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-FPGS:NM_004957:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGCCGGGACTATGTC
R:
ACTCCGTGCCAGGTACAGTTC
Band lengths:
271-1493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)