MmuINT0065767 @ mm10
Intron Retention
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32692593-32694185:-
Coord C1 exon
chr2:32693989-32694185
Coord A exon
chr2:32692722-32693988
Coord C2 exon
chr2:32692593-32692721
Length
1267 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
3' ss Seq
ACTGGGACTATGGTTGCTAGGAT
3' ss Score
1.83
Exon sequences
Seq C1 exon
GGGGCGGGGCGAAGCGGGGCGGCTCCGGCCCAGGCCTAGCTTGCGGTGGCATTAAGACTATGTCGTGGGCGCGGAGCCGACTGTGCTCGACTCTGTCCCTGGCAGCTGTTTCTGCGCGTGGTGCAACGACGGAGGGCGCGGCGCGGCGGGGGATGAGCGCGTGGCCAGCGCCACAGGAGCCGGGCATGGAGTATCAG
Seq A exon
GTTTCTGACCGTTCCCGCGGGCAAACGGTCCCGTACTGACACGTGGGCAGCACCGGAGCCTTGCTCCGCTCTCCGCCAGCTGCTGGGGGCACCGGAGCATGAAGTTGCGGGGCTCGAGAGGCGGGGACATCCCAGAGCCCAGGGGAGGTGACAGAGACCGGAAAGTTGAGCTCAGGTGGCCCGATGTGGGAATTCTGAGAGCGCGTGTCCGGTGTTGCAGAGGGAATGGGCGCAGGTGACACACCAGAACGTCCAGAATCTGAATTGAGTTTTAGAAGTTCCAATGCAGGGCAATGCAGGATGAAGGGAAGGGAGGAGTTCTGGAGTACAGAGTGGAAGTACCCAGGAGGATCTGGGATTGGGGTCTCCAAGACTCGAAGACTGGAATCTAAGTATTCAGAATTGACCGGCGGGCAGGCAGAAAAAGAGGCAATAAAGAGACCAAGAATCTAGAACAAACTGTAGATTACAAACTGTGCCAGGGTCAGTTGTCAATGACCAGAACTTAATGCTGGCCAGGCAGGTGGCACCGGTTTAGGGCTGTGAGGCTTCCAGCCAAGCCTTGAGGATAAGAGGGCAGGCGACCCAGCTGGTGCCCGAAAGGAACTGCCTAAGCACAGGTTTCTCAGAATGTAGGGTAATTGAAACACACGACTGGATTTATATCCTCAAATGCCTCTCATTTAGGCCTCTCTGTTTATTTTCTGTTTCCACTCCCATCCCCCAAAGCCGTCTCCTGAGGCTGTCTGTACCCACCTGTGGATTCTGGCCCGACAACTCTTGAGTGTACTTTCCCTCCCTCTGTACCTCCTCTTCCAGATCTAATTGCTTACTTACATTGTCTTGTCTTAGGGTTAGAAGGTGGAACTCTCAAATATTCCAAAATTCAAAGTTCCTAGATTTCTAACGTCCTGGCCCCCACTCAGTGGGTGTCCAGTATAGTGGTAGAGAGATTAAGGAAAAAACCTTCCTTCCAGGGTTGGTCTTGTGTGTGAAGGCTGAGGGCATAGAAGCTTGGGGAAGGCAGCCCAGGAAATGAAGGTCCGTTAATCTTGCCAGCTTTACCTGGCACTCCCTGGGTGGGGCTAGCTTGCCCATGGCTCCCATCTTTGCTAGAACTGGAGATATGCCAGGGCTGTCCCACCAAATAGCTGTCGGCAAAGGCAGCGTGGCTGGTATAACGGGCCTGTTGCCCTGGTTTTGCCACTGGTGGGCTGGGTCTCTCTGTCCTTAAGGACCCTCACTGAACTGGGACTATGGTTGCTAG
Seq C2 exon
GATGCTGTGCGCACGCTCAACACCCTGCAAACCAATGCCAGCTACCTGGAGCAGGTAAAGCGCCAACGGAGTGACCCCCAGGCGCAGCTGGAGGCTATGGAGATGTACCTGGCACGGAGTGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566:ENSMUST00000028148:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=NA C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTAGCTTGCGGTG
R:
CTGCAGTCCACTCCGTGC
Band lengths:
296-1563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types