HsaINT0065761 @ hg38
Intron Retention
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr9:127803324-127804413:+
Coord C1 exon
chr9:127803324-127803404
Coord A exon
chr9:127803405-127804284
Coord C2 exon
chr9:127804285-127804413
Length
880 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
CTGGGCACTGTGGTTGCCAGGAT
3' ss Score
3.85
Exon sequences
Seq C1 exon
CAGAAGCCCAGAGGCTCAGCGGTGCTTCTGGAGTTCCAGTGATCCCGGAGTCTGAACCGGCAGTGAGAGTGGGGAAAGAGG
Seq A exon
GTAGGGAAGAGACTCAGGAATTCAGGCTTGAAAGATCCAGGAGTATTGATCTGGGGGTGGGCTGTCCAGGATTCAGAAGATTGGGGATCCAAGTGCCTGGATTTGGGGGAGAGGCAGGAATCAGGGGTAGTGGAGGGCCCCAGAACCTGGAAAATAGAAAATGTCCGCGGGCGCTGTGTCAAGAGCCGGTTGCCCTAGACCAGACCCTGATGCCAGTGAGGCGGGTGGCACTGGTTTGATGAGGGTGGAGCCTCCAACCAGCCTTGAGGTCCTGAGGGTGGGAGGCACGGAATATGAGGCCTAAGGGGAATGAAATAGCACCCCCACTCCCACTTCCATTGTGAACCCTCCTGAAGCCGTACCTACCTGCCTTCCTGGCTGAGTGACCCCTGGCACACCCCTCCTCCCTCTGAGTTGCTCCTCTGTGGGTTGGAATGTGGAACCCCAGAGTCATGAGGGTTGGGGTGGAGCTTCGGGGAACTCCAGAATTCGAATACCCCAGCCTTCTGTAGTTCTGGCCCCGCTCTGGCAGGGAGCAATATAGCAATGGACCCCATTGGAGAGAATGAGGGCAAAGGCCCAGGAGTGAAGTCGGGGGAGCCTGGGCAGGAAGCAAGGCTAGCCCGTTAGTCATGCCACCTTCTTTGTGTAGCACTCCCTGGGTGGGGCTGAACTGCCCCAGACTCCCATTTTTGCCAGAGCTGGAAAGATGCCATACTCTCTGTTGCTTAACCTACAGGCTAGGCTAACAGTGCTGGCATGGCAGGCGGGCCTGGTACTGGCCTTGTTGCCCTGGCTTGGCCACTGGTCTGCTGGCTGTCTCTGTGCCTGTGGACCCTGAGTGAGCCTTAACCTACTATCTGGGCACTGTGGTTGCCAG
Seq C2 exon
GATGCCGTGCGCATGCTCAATACCCTGCAGACCAATGCCGGCTACCTGGAGCAGGTGAAGCGCCAGCGGGGTGACCCTCAGACACAGTTGGAAGCCATGGAACTGTACCTGGCACGGAGTGGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877:ENST00000423577:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.138
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGGCTCAGCGGTG
R:
CCCACTCCGTGCCAGGTA
Band lengths:
198-1078
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development