HsaINT0065761 @ hg19
Intron Retention
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:3824]
Coordinates
chr9:130565508-130566692:+
Coord C1 exon
chr9:130565508-130565683
Coord A exon
chr9:130565684-130566563
Coord C2 exon
chr9:130566564-130566692
Length
880 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
CTGGGCACTGTGGTTGCCAGGAT
3' ss Score
3.85
Exon sequences
Seq C1 exon
GGAAGTTGGGCCCGGGCCGCCGGGGCTGGGAATTCGGAGACTATAGCGTCCCCGCCCCGGGTTGGGAAGTGGGAAGTGGCACAGGAGCTAGGATCCAGAAGCCCAGAGGCTCAGCGGTGCTTCTGGAGTTCCAGTGATCCCGGAGTCTGAACCGGCAGTGAGAGTGGGGAAAGAGG
Seq A exon
GTAGGGAAGAGACTCAGGAATTCAGGCTTGAAAGATCCAGGAGTATTGATCTGGGGGTGGGCTGTCCAGGATTCAGAAGATTGGGGATCCAAGTGCCTGGATTTGGGGGAGAGGCAGGAATCAGGGGTAGTGGAGGGCCCCAGAACCTGGAAAATAGAAAATGTCCGCGGGCGCTGTGTCAAGAGCCGGTTGCCCTAGACCAGACCCTGATGCCAGTGAGGCGGGTGGCACTGGTTTGATGAGGGTGGAGCCTCCAACCAGCCTTGAGGTCCTGAGGGTGGGAGGCACGGAATATGAGGCCTAAGGGGAATGAAATAGCACCCCCACTCCCACTTCCATTGTGAACCCTCCTGAAGCCGTACCTACCTGCCTTCCTGGCTGAGTGACCCCTGGCACACCCCTCCTCCCTCTGAGTTGCTCCTCTGTGGGTTGGAATGTGGAACCCCAGAGTCATGAGGGTTGGGGTGGAGCTTCGGGGAACTCCAGAATTCGAATACCCCAGCCTTCTGTAGTTCTGGCCCCGCTCTGGCAGGGAGCAATATAGCAATGGACCCCATTGGAGAGAATGAGGGCAAAGGCCCAGGAGTGAAGTCGGGGGAGCCTGGGCAGGAAGCAAGGCTAGCCCGTTAGTCATGCCACCTTCTTTGTGTAGCACTCCCTGGGTGGGGCTGAACTGCCCCAGACTCCCATTTTTGCCAGAGCTGGAAAGATGCCATACTCTCTGTTGCTTAACCTACAGGCTAGGCTAACAGTGCTGGCATGGCAGGCGGGCCTGGTACTGGCCTTGTTGCCCTGGCTTGGCCACTGGTCTGCTGGCTGTCTCTGTGCCTGTGGACCCTGAGTGAGCCTTAACCTACTATCTGGGCACTGTGGTTGCCAG
Seq C2 exon
GATGCCGTGCGCATGCTCAATACCCTGCAGACCAATGCCGGCTACCTGGAGCAGGTGAAGCGCCAGCGGGGTGACCCTCAGACACAGTTGGAAGCCATGGAACTGTACCTGGCACGGAGTGGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-FPGS:NM_001018078:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGGGAATTCGGAGA
R:
CCCACTCCGTGCCAGGTA
Band lengths:
278-1158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)