MmuEX1010639 @ mm10
Exon Skipping
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32692593-32703961:-
Coord C1 exon
chr2:32703825-32703961
Coord A exon
chr2:32693989-32694518
Coord C2 exon
chr2:32692593-32692721
Length
530 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTAATTCTATTCCAGCTC
3' ss Score
7.74
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
GAAGCCAAGTGATGATGAAAAGCACCAGGTGCCTGCCTATGTCCTGGCCTGTGGCTGAGAAGTTCTGGTGGGAAGCAGCCATGGAGTGGAAGGACCCATCAGGGAGTGCTTACGAAGCTAAGACTGCCTCCTTTCAG
Seq A exon
CTCAGAGCTTCTCTGCCAAGGAGTCGGGACTGAGAACTGCTGGCTCGGATTGGCTATTTTTGGATGTACAGCGAAGTCCTTAAGACCTGGCACAGACCTGTGGAGGATAGCGACGAAAAGAGTACAGAGTTCCTTTAAGATGGAGGACCCCCTCCCAGGAACACCCTCTTCCCTCCACCCTCCCCGGCAGAGCGCCCCCTAGAAGCATGGCGAGAGCAGCGCACCTCCGGACCATCTGCCCCTCACAAAGATGGCCGTGATAAGGCGCTGCTTCTCATTGGTCCGGGAAAATCTAGAGACTCGGATTGGTGGGTCTTAGGATGGCGTCAGGGCGGGGCGGGGCGAAGCGGGGCGGCTCCGGCCCAGGCCTAGCTTGCGGTGGCATTAAGACTATGTCGTGGGCGCGGAGCCGACTGTGCTCGACTCTGTCCCTGGCAGCTGTTTCTGCGCGTGGTGCAACGACGGAGGGCGCGGCGCGGCGGGGGATGAGCGCGTGGCCAGCGCCACAGGAGCCGGGCATGGAGTATCAG
Seq C2 exon
GATGCTGTGCGCACGCTCAACACCCTGCAAACCAATGCCAGCTACCTGGAGCAGGTAAAGCGCCAACGGAGTGACCCCCAGGCGCAGCTGGAGGCTATGGAGATGTACCTGGCACGGAGTGGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.237 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000127812fB10213
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGTGATGATGAAAAGCACC
R:
CTGCAGTCCACTCCGTGC
Band lengths:
263-793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types