MmuEX0039068 @ mm9
Exon Skipping
Gene
ENSMUSG00000026889 | Rbm18
Description
RNA binding motif protein 18 [Source:MGI Symbol;Acc:MGI:1915139]
Coordinates
chr2:35978372-35989783:-
Coord C1 exon
chr2:35989655-35989783
Coord A exon
chr2:35982645-35982771
Coord C2 exon
chr2:35978372-35978458
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTCTGTCTCCACAGATA
3' ss Score
11.66
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TATTTCTCAGAGATTGATGGAAACAGAAACCAAAACTCTTCCCCTGGAGAATGCATCCATCCTTTCAGAGGGCTCTCTACAAGAAGGACACCGATTATGGATTGGCAACCTGGATCCCAAAATCACAGA
Seq A exon
ATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTGAAGCAGTTTGACTTCCTCTTCCATAAGTCAGGTGCTTTGGAGGGCCAGCCCCGAGGGTACTGTTTTGTTAACTTTGAAACTAAGCAG
Seq C2 exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTACGATGGGCCCACGCTCAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026889-'4-5,'4-3,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(14.9=28.9)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAACCAAAACTCTTCCCCT
R:
CTTGACTTGAGCGTGGGCC
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types