RnoEX0074562 @ rn6
Exon Skipping
Gene
ENSRNOG00000006763 | Rbm18
Description
RNA binding motif protein 18 [Source:RGD Symbol;Acc:1307411]
Coordinates
chr3:15450636-15460798:-
Coord C1 exon
chr3:15460670-15460798
Coord A exon
chr3:15453552-15453678
Coord C2 exon
chr3:15450636-15450722
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTCTGTCTCCACAGATA
3' ss Score
11.66
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TATTTTTTAGAGATTGATGGAAGCAGAAACCAAAACTCTTCCCCTGGAGAATGCATCCATCCTTTCAGAGGGCTCTCTACAAGAAGGACACCGATTATGGATTGGCAACCTGGATCCCAAAATCACAGA
Seq A exon
ATACCACCTCCTCAAGCTCCTCCAGAGGTTCGGCAAGGTGAAGCAATTCGATTTCCTCTTCCACAAGTCGGGTGCTTTGGAGGGCCAGCCCCGAGGGTACTGTTTTGTTAACTTTGAGACTAAGCAG
Seq C2 exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTGCGATGGGCCCACGCTCAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006763-'3-6,'3-3,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(14.9=28.9)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGATTGATGGAAGCAGAAACCA
R:
CTTGACCTGAGCGTGGGC
Band lengths:
210-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]