GgaEX6015563 @ galGal4
Exon Skipping
Gene
ENSGALG00000028167 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
Coordinates
chr17:8740329-8746194:-
Coord C1 exon
chr17:8746034-8746194
Coord A exon
chr17:8741133-8741259
Coord C2 exon
chr17:8740329-8740415
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTCCCCCCCCCAGGTA
3' ss Score
12.5
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CGAGGCCTGCGCGAGGCCGGGGATGGTGAGGGGCGGCCCCGCGCCGCCATGGAGCCGGAACGACAGGCGTTGCCGCTGGAGAATGCCGCCATCCTGTCCGAGGGCGCCCTGCAGGACGGGCACCGCCTCTGGATCGGCAACCTCGACCCCAAGATCACCGA
Seq A exon
GTACCACCTTCTCAAACTCCTTCAGAAGTTCGGCAAAGTAAAGCAATTTGATTTTCTCTTTCACAAGTCTGGAGCTTTGGAGGGGCAGCCAAGGGGTTACTGTTTTGTGAACTTTGAAACCAAACAG
Seq C2 exon
GAAGCAGAAAAGGCGATCCAGTGTCTCAATGGGAAGCTGGCCCTTTCCAAGAAATTGGTGGTGCGGTGGGCACACGCACAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028167-'0-6,'0-4,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(14.9=28.9)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGGGGATGGTGAG
R:
CTTGACTTGTGCGTGTGCCC
Band lengths:
236-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]