BtaEX6045989 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016367 | RBM18
Description
Bos taurus RNA binding motif protein 18 (RBM18), mRNA. [Source:RefSeq mRNA;Acc:NM_001034324]
Coordinates
chr11:93107615-93118844:-
Coord C1 exon
chr11:93118716-93118844
Coord A exon
chr11:93110672-93110798
Coord C2 exon
chr11:93107615-93107701
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGGCTGTTCTTTCTCCACAGATA
3' ss Score
11.75
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
TATTTCATAGGGATTGATGGAAGCAGAAACCAAAACTCTTCCCCTGGAGAATGCATCCATCCTTTCAGAGGGCTCCCTACAGGAAGGGCACCGGTTATGGATTGGCAACTTGGACCCCAAAATCACAGA
Seq A exon
ATACCATCTCCTCAGGCTGCTGCAGAAGTTTGGCACGGTGAAGCAGTTCGACTTCCTCTTCCACAAGTCAGGTGCTCTGGAGGGACAGCCTCGAGGGTACTGTTTCGTCAACTTTGAAACTAAGCAG
Seq C2 exon
GAAGCAGAACAAGCCATCCAGTGTCTGAACGGCAAGCTGGCCCTGTCTAAGAAGCTGGTGGTGCGCTGGGCACACGCTCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016367-'4-4,'4-2,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(14.9=28.9)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATAGGGATTGATGGAAGCAGA
R:
CTTCACTTGAGCGTGTGCCC
Band lengths:
212-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]