HsaEX1030829 @ hg38
Exon Skipping
Gene
ENSG00000119446 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
Coordinates
chr9:122245256-122247604:-
Coord C1 exon
chr9:122247518-122247604
Coord A exon
chr9:122246207-122246458
Coord C2 exon
chr9:122245256-122245341
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTCTGCATCTCATTGAAAAGGCA
3' ss Score
3.62
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GAAGCAGAGCAAGCCATCCAGTGTCTCAATGGCAAGTTGGCCCTGTCCAAGAAGCTGGTGGTGCGATGGGCACATGCTCAAGTAAAG
Seq A exon
GCACGCAAGAGAAATCATCCTCCATTCCTGTCTTTCATTTGAAAATCTCTGTGCCTCACGGTTCTCTTCTCCTATAAATCTTTTTTGACCAGAGGCTCTTGATTGCTCTTCAATATTATATTTGCTTTTTACAAGAAGTATGTAATTATCTGGCTAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATCGCTTCAGCCCAGGAGTTCAAGACCAGCCTATGCAACATA
Seq C2 exon
AGATATGATCATAACAAGAATGATAAGATTCTTCCAATCAGTCTCGAGCCATCCTCAAGCACTGAGCCTACTCAGTCTAACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119446-'11-15,'11-14,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.431
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=65.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000417201fB24252
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGAGCAAGCCATCCAG
R:
TTAGGTTAGACTGAGTAGGCTCA
Band lengths:
172-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains