DreEX6087220 @ danRer10
Exon Skipping
Gene
ENSDARG00000044255 | rbm18
Description
RNA binding motif protein 18 [Source:ZFIN;Acc:ZDB-GENE-040426-1764]
Coordinates
chr10:9514306-9528380:+
Coord C1 exon
chr10:9514306-9514419
Coord A exon
chr10:9527448-9527574
Coord C2 exon
chr10:9528300-9528380
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTGACTTTGTGTTCCTGCAGGTA
3' ss Score
12.18
5' ss Seq
GAGGTTATG
5' ss Score
0.59
Exon sequences
Seq C1 exon
GAGCCCGATGCAGTCAGCTGCAGAGACTGTGGAGAATGCCTCCATCCTGTCAGGTGGCTCGGCCCAGGACGGTCATCGGCTGTGGATCGGCAACATTGACCCCAAAATCACAGA
Seq A exon
GTATCACCTAGTGAAGCTTCTGGAGAAGTTCGGGAAAGTAAAGCAGTTTGACTTTCTGTTTCACAAGTCGGGTCCTCTGGAGGGCCAGCCAAGAGGATACTGCTTCGTCAACTTCCACACCAAAGAG
Seq C2 exon
GAGGCTGAGCGGGCTATTCAGTGTCTGAACGGGAAGTTGGCACTTTCTAAGAAGTTAGTGGTACGGTGGGCTCATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044255-'1-3,'1-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(14.9=30.6)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(25.7=70.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCGATGCAGTCAGC
R:
CTGTGCATGAGCCCACCGTA
Band lengths:
195-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]