GgaEX6015563 @ galGal3
Exon Skipping
Gene
ENSGALG00000001339 | RBM18
Description
NA
Coordinates
chr17:9448864-9454681:-
Coord C1 exon
chr17:9454569-9454681
Coord A exon
chr17:9449668-9449794
Coord C2 exon
chr17:9448864-9448950
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTCCCCCCCCCAGGTA
3' ss Score
12.5
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGGAGCCGGAACGACAGGCGTTGCCGCTGGAGAATGCCGCCATCCTGTCCGAGGGCGCCCTGCAGGACGGGCACCGCCTCTGGATCGGCAACCTCGACCCCAAGATCACCGA
Seq A exon
GTACCACCTTCTCAAACTCCTTCAGAAGTTCGGCAAAGTAAAGCAATTTGATTTTCTCTTTCACAAGTCTGGAGCTTTGGAGGGGCAGCCAAGGGGTTACTGTTTTGTGAACTTTGAAACCAAACAG
Seq C2 exon
GAAGCAGAAAAGGCGATCCAGTGTCTCAATGGGAAGCTGGCCCTTTCCAAGAAATTGGTGGTGCGGTGGGCACACGCACAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001339-'0-3,'0-1,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(14.9=28.9)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCGCTGGAGAATGCC
R:
CTTGACTTGTGCGTGTGCCC
Band lengths:
180-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]