HsaEX1030830 @ hg38
Exon Skipping
Gene
ENSG00000119446 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
Coordinates
chr9:122247518-122261508:-
Coord C1 exon
chr9:122261380-122261508
Coord A exon
chr9:122251847-122251973
Coord C2 exon
chr9:122247518-122247604
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGACTCTTCTTTCTCCACAGATA
3' ss Score
11.19
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TATTTCATAGACATTGATGGAAGCAGAAACCAAAACTCTTCCCCTGGAGAATGCATCCATCCTTTCAGAGGGCTCTCTGCAGGAAGGACACCGATTATGGATTGGCAACCTGGACCCCAAAATTACCGA
Seq A exon
ATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTAAAGCAGTTTGACTTCCTCTTCCACAAGTCAGGTGCTTTGGAGGGACAGCCTCGAGGCTACTGTTTTGTTAACTTTGAAACTAAGCAG
Seq C2 exon
GAAGCAGAGCAAGCCATCCAGTGTCTCAATGGCAAGTTGGCCCTGTCCAAGAAGCTGGTGGTGCGATGGGCACATGCTCAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119446-'5-10,'5-5,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.055 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(14.9=28.9)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATAGACATTGATGGAAGCAGA
R:
TACTTGAGCATGTGCCCATCG
Band lengths:
210-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains