MmuEX0034136 @ mm9
Exon Skipping
Gene
ENSMUSG00000075270 | Pde11a
Description
phosphodiesterase 11A [Source:MGI Symbol;Acc:MGI:3036251]
Coordinates
chr2:75888197-75913517:-
Coord C1 exon
chr2:75913410-75913517
Coord A exon
chr2:75897033-75897142
Coord C2 exon
chr2:75888197-75888287
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCCCCTTCTTCCCAGACT
3' ss Score
8.57
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACCCTGTGCAGGTGGCTTCTGACGGTAAGGAAAAACTATCGGATGGTTCTCTACCACAACTGGAGACATGCCTTCAACGTGTGCCAACTGATGTTTGCCATGCTAACT
Seq A exon
ACTGCTGGGTTCCAAGAGATTCTGACCGAGGTGGAAATTTTAGCGGTGATTGTGGGATGCCTGTGTCATGACCTCGACCACAGGGGAACCAACAATGCCTTCCAAGCTAA
Seq C2 exon
GAGTGACTCTGCACTGGCCCAGCTCTACGGGACCTCGGCGACCTTGGAGCATCACCATTTTAACCATGCTGTGATGATCCTTCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075270_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(10.4=48.6)
A:
PF0023314=PDEase_I=FE(15.0=100)
C2:
PF0023314=PDEase_I=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCAGGTGGCTTCTGAC
R:
CACTCTGAAGGATCATCACAGCA
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: