DreEX6034703 @ danRer10
Exon Skipping
Gene
ENSDARG00000063732 | pde11a
Description
phosphodiesterase 11a [Source:ZFIN;Acc:ZDB-GENE-070912-207]
Coordinates
chr9:1553778-1555259:+
Coord C1 exon
chr9:1553778-1553885
Coord A exon
chr9:1554677-1554786
Coord C2 exon
chr9:1555169-1555259
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGACA
3' ss Score
7.86
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
ACGCTGTGTCGGTGGCTGCTGACCGTGAGGAAGAACTACCGCATGGTTCTCTATCACAACTGGAGACACGCGTTCAACGTCTGCCAGTGCATGTTCTCCATGCTGACC
Seq A exon
ACAGCAGGCTTCCAGGAGACTCTGACAGAGATGGAGACACTGGCTCTGATCGTGGGCTGCATCTGCCATGATTTAGACCACAGAGGAACCAACAACGCCTTCCAGGCCAA
Seq C2 exon
GACGGGATCAGCTCTTTCTCTTCTTTACGGGACGTCAGCAACACTAGAGCACCATCATTTCAACCACGCGGTGATGATCCTGCAGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063732-'19-20,'19-18,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(14.8=50.0)
A:
PF0023314=PDEase_I=FE(15.0=100)
C2:
PF0023314=PDEase_I=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCGGTGGCTGCTGAC
R:
CTCGCTCTGCAGGATCATCAC
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]