BtaEX6008905 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016396 | PDE11A
Description
Bos taurus phosphodiesterase 11A (PDE11A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205422]
Coordinates
chr2:19154060-19179207:+
Coord C1 exon
chr2:19154060-19154167
Coord A exon
chr2:19170074-19170183
Coord C2 exon
chr2:19179117-19179207
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCTCATCTTCCCAGACC
3' ss Score
9.61
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACGCTGTGTAGGTGGCTCCTGACAGTAAGGAAGAATTACCGAATGGTCCTGTACCACAACTGGAGACACGCCTTCAACGTGTGCCAGCTGATGTTTGCGATGTTGACT
Seq A exon
ACCGCCGGGTTTCAAGAGATTCTGACCGAGGTGGAAATTTTAGCGGTGATTGTGGGATGCCTGTGTCATGACCTCGACCACAGGGGAACCAACAATGCCTTCCAAGCTAA
Seq C2 exon
GAGTGGCTCTGCCCTGGCCCAACTCTATGGAACCTCTGCCACCTTAGAGCATCACCATTTCAACCATGCAGTGATGATCCTTCAGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016396-'11-14,'11-12,13-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(28.1=50.0)
A:
PF0023314=PDEase_I=FE(15.0=100)
C2:
PF0023314=PDEase_I=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGTGTAGGTGGCTCC
R:
CGCTCTGAAGGATCATCACTGC
Band lengths:
197-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]