RnoEX0064212 @ rn6
Exon Skipping
Gene
ENSRNOG00000024457 | Pde11a
Description
phosphodiesterase 11A [Source:RGD Symbol;Acc:621793]
Coordinates
chr3:62877916-62902470:-
Coord C1 exon
chr3:62902363-62902470
Coord A exon
chr3:62886578-62886687
Coord C2 exon
chr3:62877916-62878006
Length
110 bp
Sequences
Splice sites
3' ss Seq
CATTGTCCCCTTCTTCCCAGACT
3' ss Score
8.03
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACCCTGTGCAGGTGGCTTCTGACAGTAAGGAAAAACTATCGGATGGTTCTCTACCACAACTGGAGACATGCCTTCAACGTGTGCCAGCTGATGTTTGCCATGCTAACT
Seq A exon
ACTGCTGGGTTTCAAGAGATTCTGACCGAGGTGGAAATTTTAGCGGTGATTGTGGGATGCCTGTGTCATGACCTCGACCACAGGGGAACCAACAATGCCTTCCAAGCTAA
Seq C2 exon
GAGTGACTCTGCACTGGCCCAGCTCTATGGGACCTCAGCGACCTTAGAGCATCACCACTTTAACCACGCCGTGATGATCCTTCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024457_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(7.5=50.0)
A:
PF0023314=PDEase_I=FE(15.0=100)
C2:
PF0023314=PDEase_I=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCAGGTGGCTTCTGAC
R:
CACTCTGAAGGATCATCACGGC
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]