GgaEX6042228 @ galGal4
Exon Skipping
Gene
ENSGALG00000009215 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:HGNC:8773]
Coordinates
chr7:15142851-15150651:+
Coord C1 exon
chr7:15142851-15142958
Coord A exon
chr7:15147778-15147887
Coord C2 exon
chr7:15150561-15150651
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTCCTGTTCTCAGACA
3' ss Score
9.74
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACGCTGTGTAGGTGGCTTTTGACAGTTAGGAAGAATTATCGAATGGTTTTGTATCACAACTGGAGACATGCTTTCAACGTGTGCCAACTAATGTTTGCCATGTTAACT
Seq A exon
ACAGCAGGATTTCAAGAGATTCTGACTGAAATTGAAATTTTAGCTTTGATTGTGGGATGCTTGTGTCATGACCTTGACCACAGGGGAACCAACAATGCCTTCCAAGCCAA
Seq C2 exon
GAGCGGATCAGCCTTAGCTCAGCTCTACGGCACCTCTGCTACCTTGGAGCACCACCATTTCAATCATGCTGTCATGATTCTCCAAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215-'20-17,'20-16,24-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(64.3=50.0)
A:
PF0023314=PDEase_I=FE(15.0=100)
C2:
PF0023314=PDEase_I=FE(12.5=100)
Main Skipping Isoform:
ENSGALT00000014999fB10399
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTGTAGGTGGCTTTTGA
R:
TCACTTTGGAGAATCATGACAGCA
Band lengths:
197-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]