GgaEX6042228 @ galGal3
Exon Skipping
Gene
ENSGALG00000009215 | PDE11A
Description
NA
Coordinates
chr7:16743561-16751361:+
Coord C1 exon
chr7:16743561-16743668
Coord A exon
chr7:16748488-16748597
Coord C2 exon
chr7:16751271-16751361
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTCCTGTTCTCAGACA
3' ss Score
9.74
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACGCTGTGTAGGTGGCTTTTGACAGTTAGGAAGAATTATCGAATGGTTTTGTATCACAACTGGAGACATGCTTTCAACGTGTGCCAACTAATGTTTGCCATGTTAACT
Seq A exon
ACAGCAGGATTTCAAGAGATTCTGACTGAAATTGAAATTTTAGCTTTGATTGTGGGATGCTTGTGTCATGACCTTGACCACAGGGGAACCAACAATGCCTTCCAAGCCAA
Seq C2 exon
GAGCGGATCAGCCTTAGCTCAGCTCTACGGCACCTCTGCTACCTTGGAGCACCACCATTTCAATCATGCTGTCATGATTCTCCAAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215-'12-14,'12-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(7.5=50.0)
A:
PF0023314=PDEase_I=FE(15.0=100)
C2:
PF0023314=PDEase_I=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTGTAGGTGGCTTTTGA
R:
TCACTTTGGAGAATCATGACAGCA
Band lengths:
197-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]