HsaEX6016858 @ hg38
Exon Skipping
Gene
ENSG00000128655 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:HGNC:8773]
Coordinates
chr2:177701121-177727765:-
Coord C1 exon
chr2:177727658-177727765
Coord A exon
chr2:177711769-177711878
Coord C2 exon
chr2:177701121-177701211
Length
110 bp
Sequences
Splice sites
3' ss Seq
CATTTTCCCCTTCTTCCCAGACT
3' ss Score
8.32
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACACTGTGTAGGTGGCTTTTGACAGTGAGGAAAAACTATCGGATGGTTCTATACCACAACTGGAGACATGCCTTCAACGTGTGTCAGCTGATGTTCGCGATGTTAACC
Seq A exon
ACTGCTGGGTTTCAAGACATTCTGACCGAGGTGGAAATTTTAGCGGTGATTGTGGGATGCCTGTGTCATGACCTCGACCACAGGGGAACCAACAATGCCTTCCAAGCTAA
Seq C2 exon
GAGTGGCTCTGCCCTGGCCCAACTCTATGGAACCTCTGCTACCTTGGAGCATCACCATTTCAACCACGCCGTGATGATCCTTCAAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128655_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(10.3=50.0)
A:
PF0023314=PDEase_I=FE(15.0=100)
C2:
PF0023314=PDEase_I=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGTGTAGGTGGCTTTTGA
R:
TTTGAAGGATCATCACGGCGT
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains