MmuEX0006580 @ mm9
Exon Skipping
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73711727-73730671:-
Coord C1 exon
chr2:73730532-73730671
Coord A exon
chr2:73718342-73718436
Coord C2 exon
chr2:73711727-73711802
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTTTTCTCTAGAGATA
3' ss Score
-0.59
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCGAGAGAGGACGGAAGCCTGTGGGAGCCCGTGGCCTTTAAAGTGCGATTCAGCCCTCTCCTCCGGGGCTAGTTTGTAAACACGGCCGGCCTCCGGGCTCGCGGGTGGCTGGCAGGACCATGAATTAGTGACCTGGAAAG
Seq A exon
ATACTAGATGGCAACTTGGGAAGTATTGCTTGCTTAGCAAGAGCTTAGGGATAATTCCTGTTAACAGTAAAACTCATGGCCCACCAGCTACAAAG
Seq C2 exon
TGTCTTTGCCATGAAACAGAGGACATGATAAACTGTTTACCTTAATGAAATTCAAGTTGCATGTGAATTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGCGATTCAGCCCTCTC
R:
CTGGCAGAATTCACATGCAACT
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: