BtaEX0004671 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21725942-21773647:+
Coord C1 exon
chr2:21725942-21726031
Coord A exon
chr2:21736721-21736820
Coord C2 exon
chr2:21773573-21773647
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTCCTTTGCCCTAAGGAT
3' ss Score
8.95
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CAGCCCTTTCCTCTAGGGGTAGTTTGTAAACACCGCGGAGCTTGGGTCTTCCCAACGACCGAAAAGAGCATGAACTAGTGAGCTGGAAAG
Seq A exon
GATATTTAGATGGAAGCTTGAGAAGCACTGCTTACTTGATAAGAGCTGACAGATACCTGGCAGCAGAGTAGATAAAGCTCATGGCCTACCAGCTAGAAAG
Seq C2 exon
TATCCTTGCCATGAAAAAGAGGACGTGATAAGTTGTTCAGCTTATGAAATTCAAGTTACATGTAAATTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295_MULTIEX1-1/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCTCTAGGGGTAGTTTGT
R:
CTGGCAGAATTTACATGTAACTTGA
Band lengths:
161-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development