RnoEX0012518 @ rn6
Exon Skipping
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60775286-60795951:-
Coord C1 exon
chr3:60795812-60795951
Coord A exon
chr3:60783281-60783380
Coord C2 exon
chr3:60775286-60775361
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCTTTTCTCTACAGACA
3' ss Score
11.14
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCGAGAGAGGACGGAAGCCTGTGGGAGCCCGTGGCCTTTAAAGTGCGATTCAGCCCTTTCCTCCGGGGCTAGTTTGTAAACACGGCAGCGCTCCGGGCTCGCTGGTGGCTGAAAGGAACATGAATTAGTGACCTGGAAAG
Seq A exon
ACACTAGATGGCAACTTGGGAAGTATTGCCATCCCAAGTATAGCAAGAGCTTAGGGATTCCTGTTAACAGAATAAAACTCATGGCCCACCAGCTACAAAG
Seq C2 exon
TGTCTTTGCCATGAAACAGAGGACATGATAAACTGTTTAACTTAATGAAATTCAAGTTGCATGTGAATTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597-'0-4,'0-0,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGGACGGAAGCCTGT
R:
CTGGCAGAATTCACATGCAACT
Band lengths:
214-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]