MmuEX0050341 @ mm9
Exon Skipping
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69809117-69811666:+
Coord C1 exon
chr2:69809117-69809290
Coord A exon
chr2:69809459-69809491
Coord C2 exon
chr2:69811206-69811666
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTCAACCTGCTAGAAT
3' ss Score
5.02
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTATCAATGGGTGGACCAGAGCGTTGTCATGACAGTTGGTTCCCTGGCAGTAACTTGGTATCAAACATGAGGCACTTTATAAATTATGTTAGAGTGCGAGTCCCAGAGACGGCTCCTGAGTTGAAAAGGGATCCCCTCGCCAGCACGAGCTCTGACGCTTTGGACTCTTTACAA
Seq A exon
AATTCCCGACGGCCTAAAGTTCTTCAAAGAGAG
Seq C2 exon
AATTCTGGTACAGCTCAAGTTTTCAGCTTAGTAGCAGAGCGTAGAAAGAAATTTCAGGAGATCATCAATCGCAGCAACAGTGAAGCAAATCAGGTGGTTCGGCCCAAGATTCCAAGTAAATGGTCAGCTCCTGGTTCCTCTCCCCAGTTAACCACAGCCATTTTGGAAATTAAGGAAAGCATATTGTCTTTGCTAATAAAACTTCACCACAAACTCTCAGGAAAACAAAACTCTTACTATCCTCCATGGCTTGATGACATAGAAGTTTTAATACAACCAGAAATTCCCAAATACAATCATGGAGATGGTATAACTGCTGTAGAAAGGATTTTGCTAAAAGCTGCAGTGCAAAGCAGAATGAACAAGCGCATCATTGAGGAGATATGCAGAAAAGTGACCCCTCCTGTGCCACCCAAAAAAATCACCGCAGCGGAGAAGAAAACTCTGGACAAGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-'28-29,'28-28,29-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.233 A=0.818 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTGACGCTTTGGACTC
R:
GCTTCACTGTTGCTGCGATTG
Band lengths:
114-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types