GgaEX0028858 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:19988846-19990793:-
Coord C1 exon
chr7:19990620-19990793
Coord A exon
chr7:19990399-19990428
Coord C2 exon
chr7:19988846-19989306
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCCTCAATCTACCAGAGT
3' ss Score
6.47
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GAATCTACAGGTGGACAAGAGCGTTGCCATGACAGTTGGTTTCCAGGTAGTAACTTGGTTTCTAACATGCGGCATTTCATTAACTACGTCCGAGTAAGAGTACCAGAAACTGCTCCAGAAGTGAAGAAAGAACCACCTGCAAGTACCAGTTCAGATGGTTTAGCTTCATCACAA
Seq A exon
AGTTCAAGGCGGAAGAGCCTTCAGAGAGAG
Seq C2 exon
AACTCGGGGACAGCTCAAGTGTTCAGTTTGGTTGCAGAACGTAGAAAAAAATTTCAGGAGATCATCAATCGGAACACCAGTGAAGCAAATCAAGTGGTTCGGCCCAAAGCATCAATGAAATGGTCAGCACCTGGTGCGACTCCACAGCTAACCACAGCCATTCTAGAAGTTAAAGAAAGTATGCTATCCTTGCTGATTAAATTACACCACAAACTCTCAGGAAAACAAAACTCTTATTATCCTCCATGGTTGGATGATGTGGATGTTTTAATCCACCCCGAAATTCCAAGATACTCTCATGGCGATGGGATGACAGCAGTAGAAAGAATTTTATTGAAAGCTGCTGTACAGAGCAGACTGAATAAACGTATAATAGAAGAGATATGCAGAAAGGTGACGCCTCCTGTACCGCCCAAAAAAATTAGTTCTGCAGAGAAGAAAACGTTGGATAAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.571
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGCAAGTACCAGTTCA
R:
GCTTCACTGGTGTTCCGATTGA
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event