HsaEX0068976 @ hg19
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170804052-170806575:+
Coord C1 exon
chr2:170804052-170804225
Coord A exon
chr2:170804415-170804447
Coord C2 exon
chr2:170806115-170806575
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCTTAATCTGCCAGAGT
3' ss Score
6.51
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GCATCAGTGGGTGGACCAGAACGTTGTCATGACAGTTGGTTTCCTGGCAGTAACTTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGTAAGAGTTCCAGAGACTGCTCCTGAAGTAAAGAGAGACTCACCTGCAAGTACTAGCTCTGATAACTTGGGTTCTTTACAA
Seq A exon
AGTTCACGACGGCCTAAAGTTCTTCAAAGAGAG
Seq C2 exon
AATTCTGGTACAGCTCAAGTTTTCAGTTTAGTAGCAGAACGTAGAAAGAAATTTCAGGAAATCATCAATCGCAGTAGCAGTGAAGCAAATCAGGTGGTTCGTCCCAAAACTTCAAGTAAATGGTCTGCTCCTGGTTCAGCTCCACAGTTAACTACAGCCATTTTGGAAATTAAAGAAAGCATATTGTCTTTGCTAATTAAACTTCACCACAAACTCTCAGGAAAACAAAACTCCTACTATCCTCCTTGGCTTGATGACATAGAAATTTTAATCCAACCAGAAATTCCTAAATACAGTCATGGAGATGGTATAACTGCCGTGGAAAGAATTTTACTAAAAGCTGCATCGCAAAGTAGAATGAACAAACGCATCATTGAAGAGATATGTAGAAAAGTGACCCCTCCTGTACCACCTAAAAAAGTCACTGCAGCAGAGAAGAAAACATTGGACAAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.439 A=0.818 C2=0.221
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCAAGTACTAGCTCTGA
R:
TGCTTCACTGCTACTGCGATT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)