BtaEX0038943 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26455236-26457911:-
Coord C1 exon
chr2:26457738-26457911
Coord A exon
chr2:26457287-26457319
Coord C2 exon
chr2:26455236-26455696
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTTAATCTGCCAGAGT
3' ss Score
6.29
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GCATCAGCATGTGGACCTGAACGTTGTCATGACAGTTGGTTTCCTGGTAGTAACTTAGTATCGAATATGCGACACTTTATAAATTATGTTAGAGTGAGAGTTCCAGAGACTGCTCCAGAAGTGAAGAGAGACTCACTTGCAAGTACCAGCTCTGATAGCTTGGGATCTTTACAA
Seq A exon
AGTTCACGTCGGCCTAAAGTTCTTCAAAGAGAG
Seq C2 exon
AATTCTGGTACAGCTCAGGTTTTCAGCTTAGTAGCAGAGCGCAGAAAGAAGTTTCAAGAGATCATCAATCGCAGTAACAGTGAAGCAAATCAAGTGGTTCGTCCTAAAACTTCAAGTAAATGGTCTGCACCTGGTTCAGCTCCACAGTTAACTACAGCCATTTTGGAAATTAAAGAAAGTATATTGTCTTTGTTAATTAAACTTCACCACAAACTCTCAGGAAAACAAAATTCCTACTATCCTCCTTGGCTTGATGACATAGAAATTTTAATCCAACCAGAAATTCCTAAATATAGTCATGGAGATGGTATAACTGCAGTAGAAAGAATTTTACTAAAAGCTGCATTGCAAAGCAGAATGAACAAACGCATCATTGAAGAGATATGTAGAAAAGTGACCCCTCCTGTACCACCCAAAAAGATTACTGCAGCAGAGAAGAAAACACTGGACAAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.818 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061386fB7560
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGACTGCTCCAGAAGT
R:
AACTTCTTTCTGCGCTCTGCT
Band lengths:
126-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development