GgaEX0028858 @ galGal4
Exon Skipping
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18025658-18027605:-
Coord C1 exon
chr7:18027432-18027605
Coord A exon
chr7:18027211-18027240
Coord C2 exon
chr7:18025658-18026118
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCCTCAATCTACCAGAGT
3' ss Score
6.47
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GAATCTACAGGTGGACAAGAGCGTTGCCATGACAGTTGGTTTCCAGGTAGTAACTTGGTTTCTAACATGCGGCATTTCATTAACTACGTCCGAGTAAGAGTACCAGAAACTGCTCCAGAAGTGAAGAAAGAACCACCTGCAAGTACCAGTTCAGATGGTTTAGCTTCATCACAA
Seq A exon
AGTTCAAGGCGGAAGAGCCTTCAGAGAGAG
Seq C2 exon
AACTCGGGGACAGCTCAAGTGTTCAGTTTGGTTGCAGAACGTAGAAAAAAATTTCAGGAGATCATCAATCGGAACACCAGTGAAGCAAATCAAGTGGTTCGGCCCAAAGCATCAATGAAATGGTCAGCACCTGGTGCGACTCCACAGCTAACCACAGCCATTCTAGAAGTTAAAGAAAGTATGCTATCCTTGCTGATTAAATTACACCACAAACTCTCAGGAAAACAAAACTCTTATTATCCTCCATGGTTGGATGATGTGGATGTTTTAATCCACCCCGAAATTCCAAGATACTCTCATGGCGATGGGATGACAGCAGTAGAAAGAATTTTATTGAAAGCTGCTGTACAGAGCAGACTGAATAAACGTATAATAGAAGAGATATGCAGAAAGGTGACGCCTCCTGTACCGCCCAAAAAAATTAGTTCTGCAGAGAAGAAAACGTTGGATAAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.522 A=1.000 C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000015660fB3626
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGCAAGTACCAGTTCA
R:
GCTTCACTGGTGTTCCGATTGA
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]