GgaINT1029153 @ galGal4
Intron Retention
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18025658-18027605:-
Coord C1 exon
chr7:18027432-18027605
Coord A exon
chr7:18026122-18027431
Coord C2 exon
chr7:18025658-18026121
Length
1310 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TAATTTATTTTTTTTTCCACAAG
3' ss Score
0.1
Exon sequences
Seq C1 exon
GAATCTACAGGTGGACAAGAGCGTTGCCATGACAGTTGGTTTCCAGGTAGTAACTTGGTTTCTAACATGCGGCATTTCATTAACTACGTCCGAGTAAGAGTACCAGAAACTGCTCCAGAAGTGAAGAAAGAACCACCTGCAAGTACCAGTTCAGATGGTTTAGCTTCATCACAA
Seq A exon
GTAAGTGAATGAATCCCGTCTCTTTCCTGTTGGCTGATGGTTTTGTTTGGTTGGATTTGGGGTGGGGGAAAGGGGAGATTTACTATTTTTATAAATTTCTTAGGGTAATATTTCTTTATATCAGAACTTGTTTCAGCTATTTCCTTCCTAATGTTACAGTTAATTAATCTTTTTTGTCCTCAATCTACCAGAGTTCAAGGCGGAAGAGCCTTCAGAGAGAGGTAGATCTGTGTGCCGTTTGTTCTCCTAAGCAATTAACTAGCAATATGGCTTTAACCATGCTCACCTTAACATTCAGTGACATCTTCTAATTTTCCTGAATTTCCTTTTAATTTATATTGCTTTTTTCATATTCTTGATTTGTAATCTTAGGTAGTGGACTTGCATCAAAGAACGGCCCTTAATTTCAAAATATGTATTAAAAATTTAAAACTTTATATCAAATGTAAAACATTTTTGTTAGCTTACTGCTTGAGCTTTGTGTTTAGGCCTGTTTTTTTTTTTTTTGTCTTGCCAAGATACTACTAACATTTAATAATTTGGAGTAGTCCTAGCTTTCTTAAATCTAGGTTAGTTTAAACTTAATTTGAAAGTGCATTTGAAACAAAGTAGTTTTGGCAGGTTTTATGTGTTTTTTCTTTTTCTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTGGTGGGGTTGGAACCAAAATGAATATTCAGGAAATCTTTTTGCTATGAATTTAGTATATGTAGTTTGTTTCCATGTTTCCTTAATTTGGGACTGACTGAGTGGGCTCATTCATTAGTGTAACTGCACTTGTCGGAATGGGATAGTGAGCTCTGCTTGCAAGTATGGGTTTGTGTCTTCTGGATCTCAGTTAATTCAAGCAGGATGGACAGCGGCTGTGGGGGTGTGTTTTGAGATACATTGTGTGACAGTGCTCAGTAGACTTGTATTAAAGAAATTTTAAGTAGCTCAAAGGTACGAAAATGATTAATATTCTTGAAAGAGCAGAAAATATTGCTTGGAGAACAGAATTCTAAGTTTAACTAGAGCAAAGTTAGTTGTTAGGCTGTTTGGCATGGACAAAATTTCTTCTTGTATTTGGCTTTTTATGCAGCTGCATATATCAGGTTTGTATAAAAGTATGGCATGCAGGATTAATATTTTGGTGTTCCACATTTGAATTTACAGTTTGGAAGAGAGAATCTTAAAATGTTTTGTAGATTTCCTCCTAATTGAAAATATTACTATAGCTTTATAAATGCATGTTGTTTATCCTTTATTTCTGAAAATTAAACATGGTAATTTATTTTTTTTTCCAC
Seq C2 exon
AAGAACTCGGGGACAGCTCAAGTGTTCAGTTTGGTTGCAGAACGTAGAAAAAAATTTCAGGAGATCATCAATCGGAACACCAGTGAAGCAAATCAAGTGGTTCGGCCCAAAGCATCAATGAAATGGTCAGCACCTGGTGCGACTCCACAGCTAACCACAGCCATTCTAGAAGTTAAAGAAAGTATGCTATCCTTGCTGATTAAATTACACCACAAACTCTCAGGAAAACAAAACTCTTATTATCCTCCATGGTTGGATGATGTGGATGTTTTAATCCACCCCGAAATTCCAAGATACTCTCATGGCGATGGGATGACAGCAGTAGAAAGAATTTTATTGAAAGCTGCTGTACAGAGCAGACTGAATAAACGTATAATAGAAGAGATATGCAGAAAGGTGACGCCTCCTGTACCGCCCAAAAAAATTAGTTCTGCAGAGAAGAAAACGTTGGATAAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608:ENSGALT00000015660:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGCAAGTACCAGTTCA
R:
TCATCCCATCGCCATGAGAGT
Band lengths:
358-1668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]