MmuINT0169537 @ mm10
Intron Retention
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69971060-69973609:+
Coord C1 exon
chr2:69971060-69971233
Coord A exon
chr2:69971234-69973148
Coord C2 exon
chr2:69973149-69973609
Length
1915 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTTCTTATTTCTACCTGTAGAAT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GTATCAATGGGTGGACCAGAGCGTTGTCATGACAGTTGGTTCCCTGGCAGTAACTTGGTATCAAACATGAGGCACTTTATAAATTATGTTAGAGTGCGAGTCCCAGAGACGGCTCCTGAGTTGAAAAGGGATCCCCTCGCCAGCACGAGCTCTGACGCTTTGGACTCTTTACAA
Seq A exon
GTAAGTTTAAAAGTGACGGGGATGAAAACGGAGAGGTTTTCCTTACATTGAGAAATGCTTAGATGCATTCAGAAGAAAACATTGTTAGGGGAGCTTTAGATTATCATTTATTTCTTGACATGTCTGAGCACTGTTGCCTTAACCAGTCTTTTTCCTTCAACCTGCTAGAATTCCCGACGGCCTAAAGTTCTTCAAAGAGAGGTAGATGTGTATGGTATTTGCATTAACTAGCAACATGGCTAATTGGAAATGAGGAAACAACCACTGAAGTATTTGTGTGTGTTTGTGTGTGATTAATATCATTACATTGAAAAAGAGTTCTTAAAATTAGTATTTTTTACTTTTAATAAAGTTACTTATATTTAATTTTAAATAAATTTATGTTATTGATCAAAAATGCAGAGTAGTTAGTAGTAAATTTTTCATTTTAATGTTAAAAGTGTTCTGGACCAGTTATAGGTGGGCCGTTTGGATCTACTTACAATTGTCTTACTAACATCTTAAAAATGACTTGACTATTCCTAAGTCAAAATAAATGTAATTGCTGGCAGCATGCCCATTAAAAATAATTTTTCCTTTTGCTTCTGTGGCAATTAACTAATTCAACAGGCCCATAACTTGTATTTTGTCTGTTGTGTTTTGGGACTCATTGTGAAAGCCAGCTCTTTGCATGATGCGTAAGTAATCTTTAAGATAAAGGGAGAAGCGGAGCTGCAGAGAAGACTCAGCAGTTAAGGGCCTGTCACACCTTCCAGGGGAACTGGGCTCAATTCCCAGCACCCACATGGTGGCTCACAACCGTCTGTAACTCCAGTCCCAAGCATCGGGCATGCATGTGATACACAGACATACATGTGGCCAAAATGCTCATGTACATAAAATAAATAAAATTAAAAAGAAAAAATGACATGCCAGATAATTAAGTAGTTTTTTTCCCTTTAAACCAGGTATCATGTGAATAGAGAGAGCTGAATTAGATATTTCTTGTAGTTAAGTCTACTTGTTAGAATATTTCTTACATTTGACATGTTTTTGTTGTGAACACCGGAAAGGATTTTAATTAAAAACTTGGAACCTCTATCAGAGGCTCTTTTTATTCTAATGTTGTAGAGTATTTTAAAAACATTCAAAGTTAAAATTTTATACTGAAACTTGGCTTACAAATGCATGCTTTTTAATGCTCATTTTAGAAAGATGAGATCCATTAAACAGATTCATATTTTAATTAAAAGATGGTTTCTAAGAGGCTTGATGTGTTTGCTTTAGCAAAAAGACTGTCTAGAAGACAAATTAGTGAGAAGAACACTTGTGCAGTGTGAAGCAAATTATTCAGTCTTTACATTTTATTTATCCTTACATTTCAGTTTTGAGACTTGTAATGTTGGTAATTTTCAAACTTTGAAGTTCCTTAGAAGTGAAAATAATATTTACTATAGATTTACTGTCTTAAAAAAAGTGAAGAAAAATGGAAAGGCTTTCTGTGTGGTAGCATCCTTCCTTCCAGAAGCTCCTGGAGTGCATGCAGGTTCCTGATGAGTGGGGCAGCGCAGCGCAGCGCACCGGCTTCCCTTACACTCAGGCTCACTTTATTTACTGGTTATTTAGTTTGTTCTTTCATTTTTTTGTTGTTGTTTTGTAATATGGCTGCAGACATGGCCTAAGCTTGCTTGTTTGTTTTCTGTGGAGCAGAGAGAGGGGTGACTGCCAGTGGCCTCCTGTCCCTTACCACTGTTCCCATAAAGTGGTCTTACATGTATTTGAGAAAGGAGCAAAGGAAACGAATGGGTTTATCTGCTAGAGAGATCTTTAGATGAAAATGTTAAGCATTCCCGTTGGAAAAATACTGTGATATATTTTTAGAATTGGTTGTTGACTAACTTCTTCATCTTTCTGTCGTTCTTATTTCTACCTGTAG
Seq C2 exon
AATTCTGGTACAGCTCAAGTTTTCAGCTTAGTAGCAGAGCGTAGAAAGAAATTTCAGGAGATCATCAATCGCAGCAACAGTGAAGCAAATCAGGTGGTTCGGCCCAAGATTCCAAGTAAATGGTCAGCTCCTGGTTCCTCTCCCCAGTTAACCACAGCCATTTTGGAAATTAAGGAAAGCATATTGTCTTTGCTAATAAAACTTCACCACAAACTCTCAGGAAAACAAAACTCTTACTATCCTCCATGGCTTGATGACATAGAAGTTTTAATACAACCAGAAATTCCCAAATACAATCATGGAGATGGTATAACTGCTGTAGAAAGGATTTTGCTAAAAGCTGCAGTGCAAAGCAGAATGAACAAGCGCATCATTGAGGAGATATGCAGAAAAGTGACCCCTCCTGTGCCACCCAAAAAAATCACCGCAGCGGAGAAGAAAACTCTGGACAAGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308:ENSMUST00000055758:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGTGCGAGTCCCAGAGAC
R:
TGTCATCAAGCCATGGAGGAT
Band lengths:
344-2259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types