DreEX0083007 @ danRer10
Exon Skipping
Gene
ENSDARG00000042508 | ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
Coordinates
chr9:3983492-3986037:-
Coord C1 exon
chr9:3985843-3986037
Coord A exon
chr9:3985689-3985721
Coord C2 exon
chr9:3983492-3983937
Length
33 bp
Sequences
Splice sites
3' ss Seq
ACGTCACTCTCATTCCACAGAGC
3' ss Score
10.05
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
Exon sequences
Seq C1 exon
GAGCCCTGTATCGAGGAGCACTGCCACGACAGCTGGTTCCCGGGCACCAGCCTGCTGTCTAACCTCCATCACGTCATCAACTTTGTGCGGGTTCGAGTGCCGGAGACGGCTCCGGAGGTGGAGAGGAAGCGAGAGAGGGAACGAGAGAGAGAAACTCCACCCAGCACCAGTTCAGAGAGCGCCACCTTTGGTCAG
Seq A exon
AGCTCCAGAAGGCTTACAGGAAATTGGAGAGAG
Seq C2 exon
AATCTGCGTGAAGCTCAGGTGTTCAGTCTGGTGGCGGAGCGCAGGAGAAAGTTCCAGGAGATCATCAACCGCAGCAACCATGAGGCCAGTCAGGCAGTGCGCCCCAAGTCCTCAGCGTCCCGCTGGCTTCCACCGGGAACGCCTCCACAGCTGGTGACCGAGATCCTGGAGATACGCGAGAGCATGCTGTCGCTGCTGGTTAAACTGCACCAGAAACTGTCGGCCAAGCAGAACTCTCTGTCTCTGAGCTGGTTGGCCGAGGTGGATCCTGCCCATCATGCGCACGGAGACGGTTTAACGGCCATCGAAAGAATCTTAGCCAAAGCTTCAGCTCGAAGCAGACACAGTAAAAGATGCCTACAGGAGATCTGCGGGAAAGTGTGTCCACCCATACCGCCAAAGAAGATCAGTCCTGGAGATAAGAAGAGCATGGACAAGGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042508_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.454 A=0.182 C2=0.322
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000129091fB6963
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGAAACTCCACCCAGCA
R:
TTGCTGCGGTTGATGATCTCC
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]