RnoEX0096090 @ rn6
Exon Skipping
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56213450-56216036:+
Coord C1 exon
chr3:56213450-56213623
Coord A exon
chr3:56213798-56213830
Coord C2 exon
chr3:56215576-56216036
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTCAACCTGCTAGAAT
3' ss Score
5.02
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTATCAATGGGTGGACCAGAACGTTGTCATGATAGTTGGTTCCCTGGCAGTAACTTGGTATCAAACATGCGGCACTTTATAAATTATGTCAGAGTGCGAGTCCCAGAGACTGCTCCTGAGTTGAAAAGGGATTCCCTCGCCAGCACGAGCTCTGATGGCTTGGGCTCTTTACAA
Seq A exon
AATTCCCGACGGCCTAAAGTTCTTCAAAGAGAG
Seq C2 exon
AATTCTGGTACAGCTCAAGTTTTCAGCTTAGTAGCAGAGCGTAGAAAGAAATTTCAGGAGATCATCAATCGAAACAACAGTGAAGCAAATCAGGTGGTTCGGCCCAAGACTCCAAGTAAATGGTCAGCTCCTGGCTCAGCTCCCCAGTTAACCACAGCCATTTTGGAAATTAAGGAAAGCATATTGTCTTTGCTAATAAAACTTCACCACAAACTCTCAGGAAAACAAAACTCTTACTATCCTCCATGGCTTGATGACATAGAAGTTTTAATACAACCAGAAATTCCAAAATACAGTCATGGAGACGGTATAACTGCTGTAGAAAGGATTTTGCTAAAAGCTGCAGTGCAAAGCAGAATGAACAAGCGCATCATTGAAGAGATATGCAGAAAAGTGACTCCTCCCGTGCCACCCAAAAAGATCACCACAGCAGAGAAGAAGACTCTGGACAAGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.252 A=0.818 C2=0.240
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000011380fB16036
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGATGGCTTGGGCTCTTT
R:
GCCGAACCACCTGATTTGCTT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]