MmuEX0008475 @ mm9
Exon Skipping
Gene
ENSMUSG00000079537 | C030048H21Rik
Description
RIKEN cDNA C030048H21 gene [Source:MGI Symbol;Acc:MGI:1924731]
Coordinates
chr2:26107518-26110405:-
Coord C1 exon
chr2:26110275-26110405
Coord A exon
chr2:26108860-26109002
Coord C2 exon
chr2:26107518-26107606
Length
143 bp
Sequences
Splice sites
3' ss Seq
TACCGTGTCTTGCCCTGCAGCCT
3' ss Score
9.4
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
AGTTGCAGCTCCAGAGTCAAGACCACCTGGAAGGAGGTCTCCAAGGCAAGTCAGAAAACGGAGGGGCACAGGTCTGGAAGCCCCCAAAGCCACCCCCCTCAGGAAATCTCTGAGAGCTCAGAAAGTGCACA
Seq A exon
CCTTTCCTCTGGGCAGAAGGAAGTGACATCTCCCCAGACAACTTCAGTCGCAGATGAGTCCCTGCAGCTTCTCAGACTGAACCAAGCAGATGTCATACCTGGGACCAGAAATCCATCCATGGAGAGTGAACATGATAGCCAAG
Seq C2 exon
GGCCTGGGAAACATCCTTGTGTCTTTCTCCCTGGTCTGCTGCACTCGAGCTCTCTGGACCCTGGACATCAGAAAAACCCAACTGCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079537_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(26.9=100)
A:
PF083176=Spc7=PD(16.9=56.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCAGCTCCAGAGTCAAG
R:
AGAGCAGTTGGGTTTTTCTGATGT
Band lengths:
219-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types