HsaEX1007392 @ hg38
Exon Skipping
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136259363-136262462:-
Coord C1 exon
chr9:136262311-136262462
Coord A exon
chr9:136260119-136260264
Coord C2 exon
chr9:136259363-136259448
Length
146 bp
Sequences
Splice sites
3' ss Seq
CACTCTGCATGGCCGTGCAGCCC
3' ss Score
4.81
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTTCCAGCCCCAAAGTCAAGGCCGCCTGGGAGGGAGGCTCAGAGACAAGCCAGCAGCCAGAGGCCTCCCTGTGTCCCCTGACCCCATGCAGGCCCAGCAGCTCCACCAGCCATCGCCCCCAGAGCAGCCCCGCAAGCTCAAAGGCCACGCG
Seq A exon
CCCTCCCACTGAGCAGCAGGATGTGACGCCACCCCAGACAACCTCCGATGCAGATGGTCACCAGCAGCCTCCGAGGCCAGCATGGGGCGAGGACACACACGACCCCCAGGGCCCGCTGGTGGAGAGTGGCAGCCATGTCAGTCAAG
Seq C2 exon
AGCCTGGGGAGCAGCCTCGGGCCCCTCTGCTGGGCCTGCAGCACGTGAGCCCCCCGGACGGACAGCGGCTGGGCCCAGCCTTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220-'33-34,'33-33,34-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains