MmuALTD0003008-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34987778-34989631:+
Coord C1 exon
chr2:34987778-34987876
Coord A exon
chr2:34987877-34987933
Coord C2 exon
chr2:34989478-34989631
Length
57 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTTTTTTCCCTGAAATTCAGTCC
3' ss Score
5.19
Exon sequences
Seq C1 exon
GGGAAGTGCACATGAATTTGAAGACAGACTTAGAAAGCTTTGCGCAGCCTGTTTTTGTTCCCCACGGCTCTGTCATAACAGGAAAGATTCGGAGTTAAG
Seq A exon
GTATGGTCGTTCCTCTGTGTATAAAGAAAGGGCTTGGACGGAGGAGGAGCCAGATCT
Seq C2 exon
TCCCACATGAAAGCCCAGAAGAGGGGCAAAGAACAGCAGCTTGACATTATGAACAGACAGTACACACAGCTCGAAAGCCGCCTGGACGAGATACTTTGTAGAATTGCCAAAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-14-16,15-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.373
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059116=DUF869=PU(73.1=98.0),PF138511=GAS=PU(41.3=90.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCACGGCTCTGTCATAA
R:
CAAAGTATCTCGTCCAGGCGG
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: