HsaALTD0001365-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121121823-121124084:+
Coord C1 exon
chr9:121121823-121121951
Coord A exon
chr9:121121952-121122008
Coord C2 exon
chr9:121123931-121124084
Length
57 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GATTTTTTTTTTTAATTCAGTCC
3' ss Score
6.29
Exon sequences
Seq C1 exon
GCGCTTGCAAAAATGTGGCTGTCAGAGAGGGAAGTGCACATGAATTTGAAGACAGCATTAGAAAGCGTTCCGCCCACAGTTTCTCTGTTCTCAACGGCTCAGTTTTAACAGGATAAATTTTAAGTTAAG
Seq A exon
GTATGATATTTTTTCTCTCTCTGTACAAAGGACTTAAAAGGAGGAGGAGTCAGAGAT
Seq C2 exon
TCCCATATGAAGGCTCAAAAGAGCGGTAAAGAACAACAGCTTGACATTATGAACAAGCAGTACCAACAACTTGAAAGTCGTTTGGATGAGATACTTTCTAGAATTGCTAAGGAAACGGAAGAGATTAAGGACCTTGAAGAACAGCTTACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-22-32,23-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.388
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138511=GAS=PU(35.6=69.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGGGAAGTGCACATGA
R:
AGCTGTTGTTCTTTACCGCTCT
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development