Special

MmuINT0177719 @ mm9

Intron Retention

Gene
ENSMUSG00000026788 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:MGI Symbol;Acc:MGI:1919084]
Coordinates
chr2:33320434-33324052:-
Coord C1 exon
chr2:33323953-33324052
Coord A exon
chr2:33320495-33323952
Coord C2 exon
chr2:33320434-33320494
Length
3458 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTCTCTCTGTATCCATTCAGACT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTGGTACGGCAACGGGGACGCTCCGGTAGGCTGGAGCTACGGGCGCGGAGCCGTCTGAAG
Seq A exon
GTACTGCGGGGCGGGGAGGCTGGGCGCTCGCGCGGGAGGTCGCGGTCGGGGTCACGAGTGGCCGCGACACGGGACACTGCTCTCCCTCCGACGGCGGTGATGCGGGACGGCGCGAGTGACTCCGAAGCCCCGGCGCCCCGGCTTAGAGTCCTGCGGCCTCCCGGGCGACCTCTTGGCCAAGGTCACCCCGCGGCAGGTGCACCGCCGCCTGGAGCTCTTGGAGAATCCGCCCCCGGGGCGACCTCCGGGTCGAGCCACCCACGCACGAACCGACGCCGCGAAGGAGAACCTCGCTGCCCTGAGTTTCGCCTCTTTGTCAGACCGTTGTCACCTGTTTTGTCCTCACCTGGCCTCTTGTCAGCTGGAGTTTATACTTTGCATCTTTGGTGGTGACAACCTTTGGACTTTGTCTTTACCTCTGTCTCCTCCCTTGCCTCAGTGTTTTTTGACTCTGCTTCTGCCCCCTCGGGCCGCCCTCTGGTTCAGGGCCCGAAAGTCACACTGACTTCTTGGTCATTTGTCTGTCTGTCTCTCTGTGTGTGTGTGTGTGTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCAATGTTGTGTTCTTGTTCTCTCCTTCCCAACTGAGTTTGTTTAGGCAGGGCGGGCCTTGCCTGGACCTCTGAGCCATGGAAGGTGACTCATGACCCTGTAAAACTCCCCTGGCCGGGCACCATTACCAGTGGCCCGATCACAGTCTGGTCTCAGTTCTGACAAGTGTCACCAAACCTAATAAAGTGTCAGGAGCTACTGCTTTCACGGTGAAGGCCCATCTCAGGATCTAGGCAGTGGTTTGCGCAGGTCTCCACAACTCTTTGCTCTTTCCAGAAACCCTGGGTGGCCTCCAGGGCTGTTTGGAGCTGCTCTGTTTAACCAGGCCAGCATCTACAGGCTTAGGAAGGACTAGACTTCCATCTGCCTCTGAGACCCTTAACTTAGCACAGTAGCAGAGTTCTAGGAGCAGTTTACTGAAGAACTTAGAAACCTAATAGGAATCCATTCCCTGCTTGTTTCCAAAGTATTGTCTGAGACAGAGACACCATAGGGAGGAACACTGAAACTTTTGGAGTGGAGTGTATCTGGAATAGACAGGAGATGAAACATATTTTATCAAGTGCCTGAGTCAAGTAGGCTGCCTCAGTGGATACAGAGTTTTAAGAGATGGAAAGAACGTTCTAGAAATGGTTTGTGCACAACAGTGTGAATGCTACATAACTAACTCTGGTTTGCAACATTTAGTTGAATCCTTTGTAGCAATGCAAGCCAAGCCCTTCCCAGCAGCAGGTTCAGCTGATGTGGAGTTCCTTTCAATCTTGTAGCAGCAGTTTTCCCCTCCCTCCCGGCCCCTCTGGAGTCAGTGCAGAGATCTACTGAGGGGCAGCTTGAGAAACACATTACCTTTGACATGCCAAGAGCTTGTAAAACTGGAAAGATACTCCTTATTAGAGTAGAAAGTGTTCTGGTCTTTTTTCACAGGCTAGGCCTTTTTAGTTTTCTTGGATTTTTTTTTTTTTTTTTGGCTTTGTTTGTTTGTTTCTGTTTTATAAAACTTACCTGCCTTAAGGTCATTTCCCCAGCATTTGGTTTTTTTGTTTGGTTTAGTTTGGTTTGGTTTGGTTTTTTGAGACAAGATCTCTCTATACAGACAGGATGGCCTCAAACTCTGAGATACTCTTGCCTCTACCACCTGAATGCTGGAATTAGAGACTTTTGCCCACATGCCTGGCTTCAAGCTTTGTAATATGCCTAACAGTTGACTTATTGTTGTGTTTCATTGACTCTTGATGCCATCAAGTGTTTTCTGTTCACCAAGAAAAGAAACAGTGCCTGGAGCAGAATTCATTCCCAGCACTGTGTTTCTTTATCCTAATTAAAAACACTTTGACTTAGAGGTTTAAAGAATAAAATCAGTGCACATTCAATTGGTCTTAAAATCAGAAAAACATAAACAAAGACCCATCAGTTAAAGTGCCCAGGAAAGGGATGGCTCTCCGAGACAATCCGAGCCCTGCTCTTTGAATACTGTCTGCTTCAGAGTTGTAGCAGGTCCCTTATTGGTGGAGAGGAGAGGAGGAGAACTGTGGCAGACGGTCCCTTAGTGGTGTGAGGAGAGGAGGAGAACTATAGCAGACGACGGTCCCTTAGTTGCATCTCTAGTTGTTCCAAGTGGAGTCATCCTTTGTGTCATCAGAAACATTCATCGTGCCAGGAGTGCTTCAGTCATGACCTCAGTAGCCACAGCTGTTAAAACTGCAACATACATCCTGTCTAGTGTAGCCCATGGTACTTCCACCTCCCAAGAGCTGGGTTTTCTGTATGGCTGCCAGCTCCAGCTGGCAAAATCAGCTGACCTTCTGAACTGTAAGGAGTTGAGTGCTCCTGCAGGGCTGCTTAGCTATTAGCTCACCAGAACCCTCAGAGTGGGCCTCAAAATTTTTACAGACTTAGACAACGTGCTGCCACGGTTTCTTTCCCCAGCAGAAGTCCCTCCCTTCCAGGGGTGTGACACATATCATTAACAGTAAACTGAGGAAACTAAGTGTCCTTAGACTCTCGGCTGCTTTAAAGGCAGCAGGGCCTGACCAGAGCACTCTGGCCCAGTGTTGAGGTTTTGGGGAAAGGGGCAAAAAATGGATGGACCACTGGGAGAACCGGTGGGAAATGGAGGCCGTCCCCGGAAGCAACCTACTTCAGGGAGCTTTCTCCAGGGTTTCCATGCCATTATGAAAGGTTTGGAGATCGAGAGGGAGAAGCACCGAGGCAGATTATTCTTTGGGGTAACATGTTCTAGAAGAGCCATGAACTGCACAGATAATGTAGACACTAGTGTGGCAGGGTCTGAGGAGAGCATGAGAACTGTGGCAGACAGTCCCTTGGTGATGTAGAGAGGAGGAGAACTGTGGCAGACGGTCCCTTAGTGATGGAGAGGGGAGGAGGAGAACTGTGGCAGACGGTCCCTTAGTGGTTTAGAGGAGTGGAGGAGGGATGGAAATTGACAAGTTTCTCTTTGTCTCTGTTCTTTGGCTCTGGAGTTGGTTGTTGCTGGGAGTAACGGATGAGTAGTCACTTGTTACTAAGCAGACCTTTAGGTACTCAGTACGCATCTTTCCTGGCTGGCCATTCCTGGGTTTGACCAGGCAGGAAAGCAAGACGAATCTATAGAAGCACAACACTTTAGTTCAGGAATTGTCTCACAGTTCAGCCAAGATGGGGGAGAGGTACTAAATAGCCTGACCCTGCTCACACTGCCCAGTTTGACAGCCTAGGTTTGATCCCCCGCACCCAGGTGGTGGAAGAAGAGGACAAGCTCCAGCACCTTAAGTTTTCAATGTGATTTTTCCTTTCAGAACTGAGTGTGATTTAATTTAAAGCAAGACTGAGAAATGCATTCTCTCTCTGTATCCATTCAG
Seq C2 exon
ACTGCTCTTTGATGGCCATGGCATAAGGAGCATTATCCTGGGAATACAGCTTTGCTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026788-Zbtb43:NM_027947:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:129567412-129571134 
HsaINT0184649
(ZBTB43)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr11:97582129-97605346 
ALTERNATIVE
BtaINT0165229
(ZNF297B)
Chicken
(galGal4)
chr17:10246494-10249507 
ALTERNATIVE
GgaINT1030337
(ZBTB43)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"