MmuALTA0020377-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026788 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:MGI Symbol;Acc:MGI:1919084]
Coordinates
chr2:33320434-33324052:-
Coord C1 exon
chr2:33323953-33324052
Coord A exon
NA
Coord C2 exon
chr2:33320434-33320494
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTCTCTCTGTATCCATTCAGACT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTGGTACGGCAACGGGGACGCTCCGGTAGGCTGGAGCTACGGGCGCGGAGCCGTCTGAAG
Seq A exon
NA
Seq C2 exon
ACTGCTCTTTGATGGCCATGGCATAAGGAGCATTATCCTGGGAATACAGCTTTGCTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026788-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGAATAAGGCCTTGGTAC
R:
AGAGCAAAGCTGTATTCCCAGG
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: