MmuALTA0020377-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026788 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:MGI Symbol;Acc:MGI:1919084]
Coordinates
chr2:33464914-33468532:-
Coord C1 exon
chr2:33468433-33468532
Coord A exon
NA
Coord C2 exon
chr2:33464914-33464974
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTCTCTCTGTATCCATTCAGACT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTGGTACGGCAACGGGGACGCTCCGGTAGGCTGGAGCTACGGGCGCGGAGCCGTCTGAAG
Seq A exon
NA
Seq C2 exon
ACTGCTCTTTGATGGCCATGGCATAAGGAGCATTATCCTGGGAATACAGCTTTGCTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026788-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGAATAAGGCCTTGGTAC
R:
AGAGCAAAGCTGTATTCCCAGG
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types